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python38Packages.dnachisel: 3.2.7 -> 3.2.8#137062

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fabaff merged 1 commit intoNixOS:masterfrom
r-ryantm:auto-update/python3.8-dnachisel
Sep 8, 2021
Merged

python38Packages.dnachisel: 3.2.7 -> 3.2.8#137062
fabaff merged 1 commit intoNixOS:masterfrom
r-ryantm:auto-update/python3.8-dnachisel

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@r-ryantm r-ryantm commented Sep 8, 2021

Automatic update generated by nixpkgs-update tools. This update was made based on information from passthru.updateScript.

meta.description for python38Packages.dnachisel is: "Optimize DNA sequences under constraints"

meta.homepage for python38Packages.dnachisel is: "https://github.com/Edinburgh-Genome-Foundry/DnaChisel"

meta.changelog for python38Packages.dnachisel is: ""

Updates performed
  • Ran passthru.UpdateScript
To inspect upstream changes
Impact
Checks done (click to expand)
  • built on NixOS

  • Warning: a test defined in passthru.tests did not pass

  • /nix/store/56rnwh5wx59n40ik72myg9fygp1vx308-python3.8-dnachisel-3.2.8/bin/dnachisel passed the binary check.

  • /nix/store/56rnwh5wx59n40ik72myg9fygp1vx308-python3.8-dnachisel-3.2.8/bin/.dnachisel-wrapped passed the binary check.

  • 2 of 2 passed binary check by having a zero exit code.

  • 0 of 2 passed binary check by having the new version present in output.

  • found 3.2.8 with grep in /nix/store/56rnwh5wx59n40ik72myg9fygp1vx308-python3.8-dnachisel-3.2.8

  • found 3.2.8 in filename of file in /nix/store/56rnwh5wx59n40ik72myg9fygp1vx308-python3.8-dnachisel-3.2.8

  • directory tree listing: https://gist.github.com/3aafbe16e93caceace6111dd8e145d1b

  • du listing: https://gist.github.com/2da590f876e1dce17e9d945be3157eba


Rebuild report (if merged into master) (click to expand)
8 total rebuild path(s)

2 package rebuild(s)

2 x86_64-linux rebuild(s)
2 i686-linux rebuild(s)
2 x86_64-darwin rebuild(s)
2 aarch64-linux rebuild(s)


First fifty rebuilds by attrpath
python38Packages.dnachisel
python39Packages.dnachisel
Instructions to test this update (click to expand)

Either download from Cachix:

nix-store -r /nix/store/56rnwh5wx59n40ik72myg9fygp1vx308-python3.8-dnachisel-3.2.8 \
  --option binary-caches 'https://cache.nixos.org/ https://nix-community.cachix.org/' \
  --option trusted-public-keys '
  nix-community.cachix.org-1:mB9FSh9qf2dCimDSUo8Zy7bkq5CX+/rkCWyvRCYg3Fs=
  cache.nixos.org-1:6NCHdD59X431o0gWypbMrAURkbJ16ZPMQFGspcDShjY=
  '

(The Cachix cache is only trusted for this store-path realization.)
For the Cachix download to work, your user must be in the trusted-users list or you can use sudo since root is effectively trusted.

Or, build yourself:

nix-build -A python38Packages.dnachisel https://github.com/r-ryantm/nixpkgs/archive/696ec0dc6f9738c90a1db9b42115e60ada2df1df.tar.gz

After you've downloaded or built it, look at the files and if there are any, run the binaries:

ls -la /nix/store/56rnwh5wx59n40ik72myg9fygp1vx308-python3.8-dnachisel-3.2.8
ls -la /nix/store/56rnwh5wx59n40ik72myg9fygp1vx308-python3.8-dnachisel-3.2.8/bin


Pre-merge build results

We have automatically built all packages that will get rebuilt due to
this change.

This gives evidence on whether the upgrade will break dependent packages.
Note sometimes packages show up as failed to build independent of the
change, simply because they are already broken on the target branch.

Result of nixpkgs-review run on x86_64-linux 1

2 packages built:
  • python38Packages.dnachisel
  • python39Packages.dnachisel

Maintainer pings

cc @prusnak for testing.

@github-actions github-actions bot added the 6.topic: python Python is a high-level, general-purpose programming language. label Sep 8, 2021
@ofborg ofborg bot requested a review from prusnak September 8, 2021 04:35
@ofborg ofborg bot added 10.rebuild-darwin: 1-10 This PR causes between 1 and 10 packages to rebuild on Darwin. 10.rebuild-linux: 1-10 This PR causes between 1 and 10 packages to rebuild on Linux. labels Sep 8, 2021
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r-rmcgibbo commented Sep 8, 2021

Result of nixpkgs-review pr 137062 at 696ec0d run on aarch64-linux 1

2 packages built successfully:
  • python38Packages.dnachisel
  • python39Packages.dnachisel

Result of nixpkgs-review pr 137062 at 696ec0d run on x86_64-linux 1

2 packages built successfully:
  • python38Packages.dnachisel
  • python39Packages.dnachisel

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Change looks good to me.

@fabaff fabaff merged commit 5fb9c0d into NixOS:master Sep 8, 2021
@r-ryantm r-ryantm deleted the auto-update/python3.8-dnachisel branch September 9, 2021 00:01
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6.topic: python Python is a high-level, general-purpose programming language. 10.rebuild-darwin: 1-10 This PR causes between 1 and 10 packages to rebuild on Darwin. 10.rebuild-linux: 1-10 This PR causes between 1 and 10 packages to rebuild on Linux.

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3 participants